Home About Us Contact What's New
Home>Organism>Corynebacterium cgMLST>Isolate information
Help

Full information on isolate CIP107540 (id:557)

Projects

This isolate is a member of the following projects:

SL453 study in 2022
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
557
isolate
CIP107540
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
tox production Elek
Negative
isolation year
1991
city
Marseille
country
France
continent
Europe
state or locality
Mainland France
travel history
Not documented
host
Human
source
Wound
sender
Melody Dazas, Institut Pasteur
curator
Auto Tagger
update history
10 updates show details
date entered
2018-02-20
datestamp
2025-07-18

Publication (1)

  • Grimont PA, Grimont F, Efstratiou A, De Zoysa A, Mazurova I, Ruckly C, Lejay-Collin M, Martin-Delautre S, Regnault B (2004). International nomenclature for Corynebacterium diphtheriae ribotypes. Res Microbiol 155:162-6

Sequence bin

method
Illumina
contigs
49
total length
2,375,220 bp
max length
212,659 bp
mean length
48,474 bp
N50
123,427
L50
8
N90
28,848
L90
22
N95
22,836
L95
26
%GC
53.56
Ns
0
gaps
0
loci tagged
1,398

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_165_12_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL40
Clonal group
ClG153
Genetic cluster
GC988

Show all thresholds

PrefixThresholdMatching isolates
0_0_165_12_0_081
0_0_165_12_0_0_041
0_0_165_12_0_0_0_021
0_0_165_12_0_0_0_0_011
0_0_165_12_0_0_0_0_0_001
012202242
0_010352024
0_0_16550035
0_0_165_12552
0_0_165_12_0251
0_0_165_12_0_081
0_0_165_12_0_0_041
0_0_165_12_0_0_0_021
0_0_165_12_0_0_0_0_011
0_0_165_12_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

Some groups only contain this isolate. Show single groups

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
SublineagecgMLSTSingle-linkage500experimental21 (34 isolates)
SL: 453
Genomic_clustercgMLSTSingle-linkage25experimental120 (1 isolate)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

Export:
Third party:
Analysis: