Full information on isolate FRC1874 (id:4367)
Projects (1)
This isolate is a member of the following project:
Provenance/primary metadata
- id
- 4367
- isolate
- FRC1874
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Positive
- tox production Elek
- Positive
- isolation year
- 2023
- country
- France
- continent
- Europe
- state or locality
- Mainland France
- travel history
- Madagascar
- host
- Human
- source
- Cutaneous and soft tissue
- infection or disease
- Cutaneous and soft tissue infection
- other source info
- Abscess Left foot
- accession number
- ERR13801623
- sender
- Virginie Passet, Institut Pasteur, France
- curator
- Auto Tagger
- update history
- 8 updates show details
- embargo history
- show details
- date entered
- 2023-03-27
- datestamp
- 2026-07-22
Sequence bin
- method
- Unknown
- contigs
- 42
- total length
- 2,477,337 bp
- max length
- 354,773 bp
- mean length
- 58,985 bp
- N50
- 130,385
- L50
- 7
- N90
- 36,406
- L90
- 19
- N95
- 27,133
- L95
- 23
- %GC
- 53.48
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,313
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_127_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL91
- Clonal group
- ClG897
- Genetic cluster
- GC461
Similar isolates (determined by classification schemes)
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Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
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Tools
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