Full information on isolate B-D-16-78 (id:25)
Projects (4)
This isolate is a member of the following projects:
cgMLST set-up study public
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
440 isolates
SL453 study in 2022 public
See Arcari et al. Microbial Genomics 2023 (IDs 2315 and 2336 were added after publication)
29 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
Provenance/primary metadata
- id
- 25
- isolate
- B-D-16-78
- alias
- ASM190227v1
- species
- C. diphtheriae
- biovar
- Other
- isolation year
- 2016
- city
- Malacca
- country
- Malaysia
- continent
- Asia
- travel history
- Not documented
- host
- Human
- source
- nasopharyngeal swab
- infection or disease
- diphtheria
- accession number
- CP018331
- epidemic cluster
- cryptic_7
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 1335 updates show details
- date entered
- 2017-02-07
- datestamp
- 2025-07-18
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Hong KW, Asmah Hani AW, Nurul Aina Murni CA, Pusparani RR, Chong CK, Verasahib K, Yusoff WNW, Noordin NM, Tee KK, Yin WF, Yu CY, Ang GY, Chan KG (2017). Comparative genomic and phylogenetic analysis of a toxigenic clinical isolate of Corynebacterium diphtheriae strain B-D-16-78 from Malaysia. Infect Genet Evol 54:263-270
Sequence bin
- method
- Unknown
- contigs
- 1
- length
- 2,474,151 bp
- %GC
- 53.56
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,403
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_165_2_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL40
- Clonal group
- ClG453
- Genetic cluster
- GC42
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 21 (10 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 21 (34 isolates) | SL: 453 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 21 (10 isolates) |
Schemes and loci
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