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Full information on isolate NML160506-1 (id:2338)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
2338
isolate
NML160506-1
species
C. diphtheriae
biovar
Mitis
isolation year
2016
country
Canada
continent
North America
travel history
Not documented
host
Human
source
Heel
accession number
PRJNA798684
sender
Mélanie Hennart, Institut Pasteur, France
curator
Auto Tagger
update history
9 updates show details
date entered
2022-07-29
datestamp
2025-07-28

Sequence bin

method
Illumina
contigs
21
total length
2,391,248 bp
max length
567,981 bp
mean length
113,869 bp
N50
229,676
L50
4
N90
45,863
L90
12
N95
40,608
L95
15
%GC
53.61
Ns
0
gaps
0
loci tagged
1,301

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2024-12-20

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_192_1_0_14_0_1_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL50
Clonal group
ClG50
Genetic cluster
GC11

Show all thresholds

PrefixThresholdMatching isolates
0_0_192_1_0_1486
0_0_192_1_0_14_045
0_0_192_1_0_14_0_121
0_0_192_1_0_14_0_1_011
0_0_192_1_0_14_0_1_0_001
012202380
0_010352162
0_0_19250084
0_0_192_15572
0_0_192_1_02532
0_0_192_1_0_1486
0_0_192_1_0_14_045
0_0_192_1_0_14_0_121
0_0_192_1_0_14_0_1_011
0_0_192_1_0_14_0_1_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental18 (74 isolates)
SL: 50
Genomic_clustercgMLSTSingle-linkage25experimental629 (28 isolates)
SublineagecgMLSTSingle-linkage500experimental18 (74 isolates)
SL: 50
Genomic_clustercgMLSTSingle-linkage25experimental629 (28 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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