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Full information on isolate NML171290-1 (id:2337)

Projects

This isolate is a member of the following projects:

Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
2337
isolate
NML171290-1
species
C. diphtheriae
biovar
Mitis
isolation year
2017
country
Canada
continent
North America
travel history
Not documented
host
Human
source
Toe wound
accession number
PRJNA798684
sender
Mélanie Hennart, Institut Pasteur, France
curator
Auto Tagger
update history
11 updates show details
date entered
2022-07-29
datestamp
2026-05-21

Sequence bin

method
Illumina
contigs
25
total length
2,448,267 bp
max length
421,100 bp
mean length
97,931 bp
N50
146,066
L50
5
N90
45,719
L90
15
N95
40,238
L95
18
%GC
53.74
Ns
0
gaps
0
loci tagged
1,303

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-03-17

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_192_1_0_14_0_2_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL50
Clonal group
ClG50
Genetic cluster
GC11

Show all thresholds

PrefixThresholdMatching isolates
0_0_192_1_0_1486
0_0_192_1_0_14_045
0_0_192_1_0_14_0_221
0_0_192_1_0_14_0_2_011
0_0_192_1_0_14_0_2_0_001
012202242
0_010352024
0_0_19250084
0_0_192_15572
0_0_192_1_02532
0_0_192_1_0_1486
0_0_192_1_0_14_045
0_0_192_1_0_14_0_221
0_0_192_1_0_14_0_2_011
0_0_192_1_0_14_0_2_0_001

Similar isolates (determined by classification schemes)

Experimental schemes are subject to change and are not a stable part of the nomenclature.

Classification schemeUnderlying schemeClustering methodMismatch thresholdStatusGroupFields
SublineagecgMLSTSingle-linkage500experimental18 (74 isolates)
SL: 50
Genomic_clustercgMLSTSingle-linkage25experimental629 (28 isolates)
SublineagecgMLSTSingle-linkage500experimental18 (74 isolates)
SL: 50
Genomic_clustercgMLSTSingle-linkage25experimental629 (28 isolates)

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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