Full information on isolate 1054 (id:228)
Projects (3)
This isolate is a member of the following projects:
cgMLST set-up study public
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
440 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 228
- isolate
- 1054
- alias
- S68
- species
- C. diphtheriae
- biovar
- Gravis
- isolation year
- 1998
- city
- Gomel
- country
- Belarus
- continent
- Europe
- travel history
- Not documented
- host
- Human
- accession number
- GCA_002202685.1
- epidemic cluster
- cryptic_33
- sender
- Melody Dazas, Institut Pasteur
- curator
- Auto Tagger
- update history
- 19 updates show details
- embargo history
- show details
- date entered
- 2017-12-19
- datestamp
- 2025-07-18
Publications (2)
- Grosse-Kock S, Kolodkina V, Schwalbe EC, Blom J, Burkovski A, Hoskisson PA, Brisse S, Smith D, Sutcliffe IC, Titov L, Sangal V (2017). Genomic analysis of endemic clones of toxigenic and non-toxigenic Corynebacterium diphtheriae in Belarus during and after the major epidemic in 1990s. BMC Genomics 18:873
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
Sequence bin
- method
- Unknown
- contigs
- 54
- total length
- 2,405,652 bp
- max length
- 400,079 bp
- mean length
- 44,550 bp
- N50
- 112,098
- L50
- 7
- N90
- 24,297
- L90
- 25
- N95
- 16,688
- L95
- 31
- %GC
- 53.61
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,371
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_197_5_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL5
- Clonal group
- ClG10014
- Genetic cluster
- GC144
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 157 (3 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 24 (53 isolates) | SL: 5 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 157 (3 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
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