Full information on isolate HC03 (id:17)
Projects (3)
This isolate is a member of the following projects:
cgMLST set-up study public
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
440 isolates
Hennart_diphtOscan_2023_OtherIsolates public
Publicly-available genomes and isolates from the French NRC (2018-2021)
1,250 isolates
DelgadoBlas_LINcodes_2025 public
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.
1,665 isolates
Provenance/primary metadata
- id
- 17
- isolate
- HC03
- alias
- ASM24277v1
- species
- C. diphtheriae
- isolation year
- 2000
- city
- Rio de Janeiro
- country
- Brazil
- continent
- South America
- travel history
- Not documented
- host
- Human
- source
- blood
- infection or disease
- endocarditis
- accession number
- CP003214
- sender
- Melody Dazas, Institut Pasteur
- curator
- Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
- update history
- 1288 updates show details
- embargo history
- show details
- date entered
- 2017-02-07
- datestamp
- 2026-09-01
Publications (2)
- Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
- Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A (2012). Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia. J Bacteriol 194:3199-215
Sequence bin
- method
- Unknown
- contigs
- 1
- length
- 2,478,364 bp
- %GC
- 53.50
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,386
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Minimum N50 |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_43_0_0_0_0_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL171
- Clonal group
- ClG171
- Genetic cluster
- GC933
Similar isolates (determined by classification schemes)
Some groups only contain this isolate. Show single groups
Experimental schemes are subject to change and are not a stable part of the nomenclature.
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Analysis:
Export: