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Full information on isolate FRC0132 (id:121)

Projects

This isolate is a member of the following projects:

cgMLST set-up study
Isolates included in the cgMLST study (Guglielmini et al. J CLin Microbiol 2021 https://pubmed.ncbi.nlm.nih.gov/34524891/)
ResistanceGenomics
Hennart et al. 247 isolates dataset
Hennart_diphtOscan_2023_OtherIsolates
Publicly-available genomes and isolates from the French NRC (2018-2021)
DelgadoBlas_LINcodes_2025
Dataset of 1,665 isolates of C. diphtheriae, C. belfantii and C. rouxii used for the population structure analysis of C. diphtheriae sensu lato.

Provenance/primary metadata

id
121
isolate
FRC0132
species
C. diphtheriae
biovar
Mitis
tox gene PCR
Negative
isolation year
2013
country
France
continent
Europe
state or locality
Mainland France
travel history
None
host
Human
source
Not documented
infection or disease
Wound
accession number
ERS1867708
sender
Marina Barros, Institut Pasteur
curator
Martin Rethoret-Pasty, Institut Pasteur, Paris, France (E-mail: martin.rethoret-pasty@pasteur.fr)
update history
1348 updates show details
date entered
2017-02-13
datestamp
2026-09-01

Publications (3)

  • Dazas M, Badell E, Carmi-Leroy A, Criscuolo A, Brisse S (2018). Taxonomic status of Corynebacterium diphtheriae biovar Belfanti and proposal of Corynebacterium belfantii sp. nov. Int J Syst Evol Microbiol 68:3826-3831
  • Guglielmini J, Hennart M, Badell E, Toubiana J, Criscuolo A, Brisse S (2021). Genomic Epidemiology and Strain Taxonomy of Corynebacterium diphtheriae. J Clin Microbiol 59:e0158121
  • Hennart M, Panunzi LG, Rodrigues C, Gaday Q, Baines SL, Barros-Pinkelnig M, Carmi-Leroy A, Dazas M, Wehenkel AM, Didelot X, Toubiana J, Badell E, Brisse S (2020). Population genomics and antimicrobial resistance in Corynebacterium diphtheriae. Genome Med 12:107

Sequence bin

method
Illumina
contigs
59
total length
2,422,441 bp
max length
343,638 bp
mean length
41,059 bp
N50
88,375
L50
8
N90
23,874
L90
29
N95
20,308
L95
34
%GC
53.68
Ns
0
gaps
0
loci tagged
1,411

Show sequence bin

Assembly checks

CheckStatusWarn/fail reason
Number of contigs
Assembly size
Minimum N50
%GC

Analysis

rMLST species identification

RankTaxonTaxonomySupportMatches
SPECIES Corynebacterium diphtheriae Actinomycetota > Actinomycetes > Mycobacteriales > Corynebacteriaceae > Corynebacterium > Corynebacterium diphtheriae 100%

Analysis performed: 2025-06-05

Similar isolates (determined by LIN codes)

Scheme
cgMLST
LIN code
0_0_155_0_0_0_0_0_0_0
Species
C. diphtheriae
Lineage
0_0
Sublineage
SL251
Clonal group
ClG251
Genetic cluster
GC886

Show all thresholds

PrefixThresholdMatching isolates
0_0_155_0_0_081
0_0_155_0_0_0_041
0_0_155_0_0_0_0_021
0_0_155_0_0_0_0_0_011
0_0_155_0_0_0_0_0_0_001
012202242
0_010352024
0_0_1555001
0_0_155_0551
0_0_155_0_0251
0_0_155_0_0_081
0_0_155_0_0_0_041
0_0_155_0_0_0_0_021
0_0_155_0_0_0_0_0_011
0_0_155_0_0_0_0_0_0_001

Similar isolates (determined by classification schemes)

No similar isolates at any threshold. Show groups

Schemes and loci

Navigate and select schemes within tree to display allele designations

Tools

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