Full information on isolate FRC0801 (id:1029)
Projects
Provenance/primary metadata
- id
- 1029
- isolate
- FRC0801
- species
- C. diphtheriae
- biovar
- Mitis
- tox gene PCR
- Negative
- isolation year
- 2019
- country
- Mayotte
- continent
- Africa
- state or locality
- Mayotte
- travel history
- Not documented
- host
- Human
- source
- Cutaneous
- infection or disease
- Not documented
- sender
- Sylvain Brisse, Institut Pasteur, Paris, France
- curator
- Auto Tagger
- update history
- 14 updates show details
- date entered
- 2020-09-07
- datestamp
- 2025-07-18
Sequence bin
- method
- Unknown
- contigs
- 29
- total length
- 2,360,086 bp
- max length
- 598,603 bp
- mean length
- 81,383 bp
- N50
- 212,359
- L50
- 4
- N90
- 42,362
- L90
- 12
- N95
- 25,196
- L95
- 15
- %GC
- 53.67
- Ns
- 0
- gaps
- 0
- loci tagged
- 1,307
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Similar isolates (determined by LIN codes)
- Scheme
- cgMLST
- LIN code
- 0_0_192_0_1_2_1_0_0_0
- Species
- C. diphtheriae
- Lineage
- 0_0
- Sublineage
- SL50
- Clonal group
- ClG388
- Genetic cluster
- GC106
Similar isolates (determined by classification schemes)
Experimental schemes are subject to change and are not a stable part of the nomenclature.
| Classification scheme | Underlying scheme | Clustering method | Mismatch threshold | Status | Group | Fields |
|---|---|---|---|---|---|---|
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 127 (5 isolates) | |
| Sublineage | cgMLST | Single-linkage | 500 | experimental | 18 (74 isolates) | SL: 50 |
| Genomic_cluster | cgMLST | Single-linkage | 25 | experimental | 127 (5 isolates) |
Schemes and loci
Navigate and select schemes within tree to display allele designations
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