Full information on isolate 9SE (id:735)
Provenance/primary metadata
- id
- 735
- isolate
- 9SE
- biosample
- SAMN25227152
- isolation year
- 2021
- world region
- Africa
- country
- Sudan
- city
- Khartoum
- host
- Environment
- source
- Swab
- infection
- Table surface
- other infection info
- Isolated from vegtable table surface in Khartoum markets
- sender
- Hisham Altayb, King Abdulaziz university
- curator
- Auto Tagger
- update history
- 4 updates show details
- date entered
- 2022-03-01
- datestamp
- 2022-12-22
Sequence bin
- contigs
- 45
- total length
- 2,505,680 bp
- max length
- 568,373 bp
- mean length
- 55,682 bp
- N50
- 165,065
- L50
- 5
- N90
- 47,307
- L90
- 18
- N95
- 22,657
- L95
- 21
- %GC
- 32.11
- Ns
- 0
- gaps
- 0
- loci tagged
- 731
Assembly checks
| Check | Status | Warn/fail reason |
|---|---|---|
| Number of contigs | ||
| Assembly size | ||
| Minimum N50 | ||
| %GC |
Schemes and loci
Navigate and select schemes within tree to display allele designations
Tools
Export:
Analysis: