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cgMLST profiles:
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cgMLST ulcerans pr…
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63 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields																cgMLST							cgMLST_ulcerans	MLST									Ribosomal MLST			spuA_island	tox
id	isolate	aliases	duplicate number	species	biovar	tox gene PCR	tox production Elek	country	travel history	host	source	infection or disease	other source info	resistance info	accession number	cgST	LINcode	Species	Lineage	Sublineage	Clonal group	Genetic cluster	cgST	atpA	dnaE	dnaK	fusA	leuA	odhA	rpoB	ST	clonal complex	rST	species	subspecies	amy	TT	prediction
459	FRC0405			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Not documented	Not documented			ERS4330926	1709 [+1 more] 435	0_0_52_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL536	ClG536	GC226		2	2	2	3	11	64	4	536					50
526	FRC0529			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	respiratory	Lower RTI			ERS4330980	1756 [+1 more] 496	0_0_40_2_0_0_0_0_0_0	C. diphtheriae	0_0	SL128	ClG128	GC54		2	1	47	19	13	3	6	128					56
540	FRC0551			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented			ERS4330991	1767 [+1 more] 509	0_24_1_0_0_0_1_0_0_0	C. diphtheriae	0_24	SL427	ClG427	GC110		3	2	73	4	4	22	4	427					57
790	FRC0403			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Not documented				1898 [+1 more] 666	0_24_1_0_0_0_0_0_0_0	C. diphtheriae	0_24	SL427	ClG427	GC110		3	2	73	4	4	22	4	427					57
791	FRC0575			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Cutaneous	Cutaneous and soft tissue infection				1899 [+1 more] 667	0_0_41_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL774	ClG10177	GC56		2	1	47	19	13	3	6	128					10
792	FRC0604			C. diphtheriae	Mitis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1900 [+1 more] 668	0_0_227_0_0_1_0_0_0_0	C. diphtheriae	0_0	SL579	ClG579	GC132		5	2	123	38	43	2	4	579
793	FRC0605			C. diphtheriae	Mitis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1901 [+1 more] 669	0_0_225_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL580	ClG580	GC131		4	1	40	71	3	3	4	580
794	FRC0632			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1902 [+1 more] 670	0_0_41_0_0_0_0_0_1_0	C. diphtheriae	0_0	SL774	ClG10177	GC56		2	1	47	19	13	3	6	128					10
795	FRC0639			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1903 [+1 more] 671	0_0_52_0_1_0_0_0_0_0	C. diphtheriae	0_0	SL536	ClG536	GC39		2	2	2	3	11	64	4	536					50
796	FRC0657			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1904 [+1 more] 672	0_0_52_0_0_0_1_0_0_0	C. diphtheriae	0_0	SL536	ClG536	GC226		2	2	2	3	11	64	4	536					50
797	FRC0662			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Cutaneous				1899 [+1 more] 667	0_0_41_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL774	ClG10177	GC56		2	1	47	19	13	3	6	128					10
805	FRC0668			C. diphtheriae	Mitis	Negative		French Guiana	None	Human	Not documented	Cutaneous diphtheria				1908 [+1 more] 677	0_0_70_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL229	ClG10042	GC823		2	2	13	3	41	16	4	229
807	FRC0705			C. diphtheriae	Gravis	Negative		French Guiana	None	Human	Not documented	Not documented				1910 [+2 more] 679, 1997	0_0_41_0_0_0_0_1_0_0	C. diphtheriae	0_0	SL774	ClG10177	GC56		2	1	47	19	13	3	6	128					10
959	FRC0710			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Not documented	Not documented				2000 [+1 more] 791	0_0_40_2_0_0_1_0_0_0	C. diphtheriae	0_0	SL128	ClG128	GC54		2	1	47	19	13	3	6	128					56
960	FRC0711			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Not documented	Not documented				2001 [+1 more] 792	0_0_231_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL681	ClG681	GC88		3	2	47	3	3	3	9	681
961	FRC0712			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Not documented	Not documented				2002 [+1 more] 793	0_25_0_0_0_0_0_0_0_0	C. diphtheriae	0_25	SL693	ClG693	GC459		2	10	20	85	20	5	4	693					75
1018	FRC0787			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented				2038 [+1 more] 843	0_0_40_2_0_2_0_0_0_0	C. diphtheriae	0_0	SL128	ClG128	GC54		2	1	47	19	13	3	6	128					56
1019	FRC0789			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented				2001 [+1 more] 792	0_0_231_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL681	ClG681	GC88		3	2	47	3	3	3	9	681
1022	FRC0796			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented				2040 [+1 more] 846	0_0_40_2_0_4_0_0_0_0	C. diphtheriae	0_0	SL128	ClG128	GC54		2	1	47	19	13	3	6	128					56
1026	FRC0798			C. diphtheriae	Gravis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented				1899 [+1 more] 667	0_0_41_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL774	ClG10177	GC56		2	1	47	19	13	3	6	128					10
1032	FRC0806			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Cutaneous	Not documented				2044 [+1 more] 854	0_0_231_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL681	ClG10154	GC720		3	2	47	3	3	3	9	681
1042	FRC0825			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Cutaneous	Wound				2049 [+1 more] 863	0_0_227_0_1_0_0_0_0_0	C. diphtheriae	0_0	SL579	ClG579	GC773		5	2	123	38	43	2	4	579
1043	FRC0826			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Cutaneous	Wound				2050 [+1 more] 864	0_0_67_2_0_0_0_0_0_0	C. diphtheriae	0_0	SL796	ClG634	GC103		3	2	131	4	3	2	4	634
1064	FRC0853			C. diphtheriae	Mitis	Negative		French Guiana	Not documented	Human	Cutaneous	Wound				2060 [+1 more] 884	0_0_67_2_0_0_0_2_0_0	C. diphtheriae	0_0	SL796	ClG634	GC103		3	2	131	4	3	2	4	634
1168	FRC0985			C. diphtheriae	Belfanti	Negative		French Guiana	None	Human	Cutaneous	Not documented				2110 [+1 more] 985	0_0_226_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL764	ClG764	GC146		4	1	123	38	3	3	4	764

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Ahmad et al. 2017 Genome Announc 5:
Badell et al. 2020 Res Microbiol 171:122-127
Badell et al. 2021 Lancet Microbe 2:e386-e396
Barksdale 1970 Bacteriol Rev 34:378-422
Berger et al. 2019 Euro Surveill 24:
Cerdeño-Tárraga et al. 2003 Nucleic Acids Res 31:6516-23
Chorlton et al. 2020 J Clin Microbiol 58:
Dangel et al. 2018 Emerg Infect Dis 24:1239-1245
Dazas et al. 2018 Int J Syst Evol Microbiol 68:3826-3831
du Plessis et al. 2017 Emerg Infect Dis 23:1308-1315
Encinas et al. 2015 Mem Inst Oswaldo Cruz 110:817-9
Fokin et al. 1972 Neirofiziologiia 4:439-46
Forde et al. 2021 Clin Infect Dis 73:e4531-e4538
Graham et al. 2023 Epidemiol Infect [Epub ahead of print]:1-17
Grimont et al. 2004 Res Microbiol 155:162-6
Grosse-Kock et al. 2017 BMC Genomics 18:873
Guglielmini et al. 2021 J Clin Microbiol 59:e0158121
Hennart et al. 2020 Genome Med 12:107
Hoefer et al. 2021 J Clin Microbiol 59:
Hong et al. 2017 Infect Genet Evol 54:263-270
Lai et al. 2018 Emerg Infect Dis 24:2084-2086
Meinel et al. 2016 Clin Microbiol Infect 22:1003.e1-1003.e8
Nakao et al. 1996 J Clin Microbiol 34:1711-6
Pivot et al. 2019 J Clin Microbiol 57:
Sangal et al. 2012 J Bacteriol 194:3269
Sangal et al. 2012 J Bacteriol 194:4738
Sangal et al. 2014 Infect Genet Evol 21:54-7
Sangal et al. 2015 BMC Genomics 16:765
Sangal et al. 2017 Front Public Health 5:218
Schaeffer et al. 2021 J Clin Microbiol 59:
Slinko et al. 2023 Commun Dis Intell (2018) 47:
Striga et al. 1990 Acta Med Iugosl 44:521-32
Tagini et al. 2018 Front Microbiol 9:1743
Timms et al. 2018 BMC Genomics 19:869
Trost et al. 2012 J Bacteriol 194:3199-215
Will et al. 2021 Nat Commun 12:1500
Xiaoli et al. 2020 Microb Genom 6:

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