Search or browse database

Restricted view: Note that you are currently restricted to viewing or downloading data that was submitted on or prior to 2024-12-31. Please log in to access the full dataset.

Enter search criteria or leave blank to browse all records. Modify form parameters to filter or enter a list of values.

Isolate provenance/primary metadata fields

Allele designations/scheme fields

Display/sort options

Order by:
Display: records per page

Action Reset

Modify form parameters

Click to add or remove additional query terms:

Provenance fields
Allele designations/scheme field values
Allele designation counts
Allele designation status
Sequence bin
Assembly checks
Tagged sequence counts
Tagged sequence status
Attribute values list
Filters

74 records returned (1 - 25 displayed). Click the hyperlinks for detailed information.

Isolate fields																cgMLST							cgMLST_ulcerans	MLST									Ribosomal MLST			spuA_island	tox
id	isolate	aliases	duplicate number	species	biovar	tox gene PCR	tox production Elek	country	travel history	host	source	infection or disease	other source info	resistance info	accession number	cgST	LINcode	Species	Lineage	Sublineage	Clonal group	Genetic cluster	cgST	atpA	dnaE	dnaK	fusA	leuA	odhA	rpoB	ST	clonal complex	rST	species	subspecies	amy (spuA)	TT	prediction
21	CDCE8392			C. diphtheriae		Positive		USA	Not documented	Human	respiratory	diphtheria			CP003211	1441 [+1 more] 19	0_0_192_1_0_9_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						4	toxigenic (diphtheriae)
171	FRC0409			C. diphtheriae	Mitis	Negative		Mayotte	Not documented	Human	Not documented	Wound			ERS4330929	159	0_0_192_0_2_0_0_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC963		2	2	4	1	3	3	46	388
172	FRC0376			C. diphtheriae	Gravis	Positive	Positive	Réunion	Not documented	Human	Skin	Not documented			ERS4330921	160	0_0_192_0_0_0_0_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC782		2	2	4	1	3	3	46	388						16	toxigenic (diphtheriae)
533	FRC0543			C. diphtheriae	Gravis	Negative		Mayotte	Not documented	Human	Cutaneous	Cutaneous and soft tissue infection			ERS4330986	502	0_0_192_0_1_1_0_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC106		2	2	4	1	3	3	46	388
534	FRC0544			C. diphtheriae	Mitis	Negative		Mayotte	Not documented	Human	Cutaneous and soft tissue	Cutaneous and soft tissue infection	Surinfected Elephantiosis		ERS4330987	503	0_0_192_0_1_0_0_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC106		2	2	4	1	3	3	46	388
881	FRC0640			C. diphtheriae	Mitis	Negative		France	None	Human	Respiratory	Not documented				730	0_0_192_0_1_2_0_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC106		2	2	4	1	3	3	46	388
1029	FRC0801			C. diphtheriae	Mitis	Negative		Mayotte	Not documented	Human	Cutaneous	Not documented				851	0_0_192_0_1_2_1_0_0_0	C. diphtheriae	0_0	SL50	ClG388	GC106		2	2	4	1	3	3	46	388
1274	PC0112			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343857	2178 [+1 more] 1082	0_0_192_1_0_5_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1275	PC0113			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343858	2179 [+1 more] 1083	0_0_192_1_0_0_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1276	PC0114			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343859	2180 [+1 more] 1084	0_0_192_1_0_1_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1277	PC0115			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343860	2181 [+1 more] 1085	0_0_192_1_0_2_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1278	PC0116			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343861	2182 [+1 more] 1086	0_0_192_1_0_6_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1279	PC0117			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343862	2183 [+1 more] 1087	0_0_192_1_0_3_0_0_1_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1280	PC0118			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343863	2184 [+1 more] 1088	0_0_192_1_0_3_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1282	PC0119			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343864	2186 [+1 more] 1090	0_0_192_1_0_0_1_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
1303	PC0120			C. diphtheriae	Mitis		Negative	USA	None	Human					SAMN13343865	2201 [+1 more] 1108	0_0_192_1_0_7_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						26	non-toxigenic (diphtheriae)
2337	NML171290-1			C. diphtheriae	Mitis			Canada	Not documented	Human	Toe wound				PRJNA798684	1377	0_0_192_1_0_14_0_2_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						30
2338	NML160506-1			C. diphtheriae	Mitis			Canada	Not documented	Human	Heel				PRJNA798684	1378	0_0_192_1_0_14_0_1_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						30
2339	NML200132			C. diphtheriae				Canada	Not documented	Human	Scalp				PRJNA798684	1379	0_0_192_1_2_0_2_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC43		2	2	4	1	3	3	2	50
2340	NML191344			C. diphtheriae				Canada	Not documented	Human	Arm				PRJNA798684	1380	0_0_192_1_0_11_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC11		2	2	4	1	3	3	2	50						39
2341	NML190968			C. diphtheriae				Canada	Not documented	Human	throat				PRJNA798684	1381	0_0_192_1_1_3_0_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC22		2	2	4	1	3	3	2	50
2342	NML190940			C. diphtheriae				Canada	Not documented	Human	Popliteal fossa swab				PRJNA798684	1382	0_0_192_1_1_1_1_3_0_0	C. diphtheriae	0_0	SL50	ClG50	GC22		2	2	4	1	3	3	2	50
2343	NML190621			C. diphtheriae				Canada	Not documented	Human	throat				PRJNA798684	1383	0_0_192_1_1_1_2_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC22		2	2	4	1	3	3	2	50
2344	NML190609			C. diphtheriae				Canada	Not documented	Human	throat				PRJNA798684	1384	0_0_192_1_1_1_1_0_0_0	C. diphtheriae	0_0	SL50	ClG50	GC22		2	2	4	1	3	3	2	50
2345	NML190608			C. diphtheriae				Canada	Not documented	Human	Nose				PRJNA798684	1385	0_0_192_1_1_1_1_4_0_0	C. diphtheriae	0_0	SL50	ClG50	GC22		2	2	4	1	3	3	2	50

Analysis tools

Breakdown:

Analysis:

Export:

Third party:

Search or browse database

Modify form parameters

Analysis tools

Dashboard settings